12/25/2022 0 Comments Hidden colors 1 tubes![]() ![]() ![]() choose Hide>Everything for the selection.switch your Mouse Mode to 3-button viewing, then use the +Box selection (Shift+Left mouse) to select the 'background' portion to hide.move the model around until you visually see the part to remove.Basically this is just a few 'layers' of lipid, with the helix among them. Version B: with the 'front' elements, and the helix. ![]() Version A: with all the elements except for the helix.Now, you'll need to save multiple versions of your model. # move the model to find the view you want, # and use get_view to get the coordinate description get_view # set ray_trace_mode to black and white outline set ray_trace_mode, 2 # When you have the scene set like you want, # continue with. pdb # hide the initially loaded representation hide everything, helix # make the helical struct into a cartoon form show cartoon, helix # style the cartoon form cartoon putty # reposition the helix among the lipids using # the 3-Button Editing Mouse Mode # basically # Shift+Left Mouse to rotate the helix # Shift+Middle Mouse to move the helix # also, you may want to make liberal use of the # get_view and set_view commands. cbag lipids # select all hydrogens and remove them from the model select hideme, hydro hide everything, hideme delete hideme # create phosphate spheres create phos, elem p hide everything, phos show spheres, phos # load helix model load helix. pdb # hide the initially loaded representation hide all # set background color to white bg_color white # show lipid model as sticks show sticks, lipids # color the lipids model by element CHNOS #2 (carbon green) util. ![]()
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